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2021-04-15 09:22:18 -04:00

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# Template for deploying k3s and Flux backed by SOPS secrets
Template for creating a [k3s](https://k3s.io/) cluster with [k3sup](https://github.com/alexellis/k3sup).
The purpose here is to showcase how you can deploy an entire Kubernetes cluster and show it off to the world using the [GitOps](https://www.weave.works/blog/what-is-gitops-really) tool [Flux](https://toolkit.fluxcd.io/).
The components installed by default are listed below and can be replaced to your liking. They are only included to get a minimum viable cluster up and running.
- [k3s](https://k3s.io/)
- [flannel](https://github.com/flannel-io/flannel)
- [local-path-provisioner](https://github.com/rancher/local-path-provisioner)
- [flux](https://toolkit.fluxcd.io/)
- [metallb](https://metallb.universe.tf/)
- [cert-manager](https://cert-manager.io/) with Cloudflare DNS challenge
- [ingress-nginx](https://kubernetes.github.io/ingress-nginx/)
- [homer](https://github.com/bastienwirtz/homer)
## :memo:  Prerequisites
### :computer:  Nodes
Bare metal or VMs with any modern operating system like Ubuntu, Debian or CentOS.
### :wrench:  Tools
| Tool | Purpose | Minimum version | Required |
|--------------------------------------------------------------------|--------------------------------------------------------------------------------------------------------------------------|:---------------:|:--------:|
| [k3sup](https://github.com/alexellis/k3sup) | Tool to install k3s on your nodes | `0.10.2` | ✅ |
| [kubectl](https://kubernetes.io/docs/tasks/tools/) | Allows you to run commands against Kubernetes clusters | `1.21.0` | ✅ |
| [flux](https://toolkit.fluxcd.io/) | Operator that manages your k8s cluster based on your Git repository | `0.12.3` | ✅ |
| [SOPS](https://github.com/mozilla/sops) | Encrypts k8s secrets with GnuPG | `3.7.1` | ✅ |
| [GnuPG](https://gnupg.org/) | Encrypts and signs your data | `2.2.27` | ✅ |
| [pinentry](https://gnupg.org/related_software/pinentry/index.html) | Allows GnuPG to read passphrases and PIN numbers | `1.1.1` | ✅ |
| [direnv](https://github.com/direnv/direnv) | Exports env vars based on present working directory | `2.28.0` | ❌ |
| [pre-commit](https://github.com/pre-commit/pre-commit) | Keeps formatting consistency across your files and ensures you **do not commit un-encrypted secrets** to your repository | `2.12.0` | ❌ |
| [kustomize](https://kustomize.io/) | Template-free way to customize application configuration | `4.1.0` | ❌ |
## :warning:  Pre-installation
It's very important and I cannot stress enough, make sure you are not pushing your secrets un-encrypted to a public Git repo.
I would start off **by making your repository private** until you are certain there are no leaks before showing it off to the world.
## :rocket:  Lets go!
Very first step will be to create a new repository by clicking the **Use this template** button on this page.
### :closed_lock_with_key:  Setting up GnuPG keys
Here we will create a personal and a Flux GPG key. Using SOPS with GnuPG allows us to encrypt and decrypt secrets.
1. Create a Personal GPG Key, password protected, and export the fingerprint
```sh
export GPG_TTY=$(tty)
export PERSONAL_KEY_NAME="First name Last name (location) <email>"
gpg --batch --full-generate-key <<EOF
Key-Type: 1
Key-Length: 4096
Subkey-Type: 1
Subkey-Length: 4096
Expire-Date: 0
Name-Real: ${PERSONAL_KEY_NAME}
EOF
gpg --list-secret-keys "${PERSONAL_KEY_NAME}"
# pub rsa4096 2021-03-11 [SC]
# 772154FFF783DE317KLCA0EC77149AC618D75581
# uid [ultimate] k8s@home (Macbook) <k8s-at-home@gmail.com>
# sub rsa4096 2021-03-11 [E]
export PERSONAL_KEY_FP=772154FFF783DE317KLCA0EC77149AC618D75581
```
2. Create a Flux GPG Key and export the fingerprint
```sh
export GPG_TTY=$(tty)
export FLUX_KEY_NAME="Cluster name (Flux) <email>"
gpg --batch --full-generate-key <<EOF
%no-protection
Key-Type: 1
Key-Length: 4096
Subkey-Type: 1
Subkey-Length: 4096
Expire-Date: 0
Name-Real: ${FLUX_KEY_NAME}
EOF
gpg --list-secret-keys "${FLUX_KEY_NAME}"
# pub rsa4096 2021-03-11 [SC]
# AB675CE4CC64251G3S9AE1DAA88ARRTY2C009E2D
# uid [ultimate] Home cluster (Flux) <k8s-at-home@gmail.com>
# sub rsa4096 2021-03-11 [E]
export FLUX_KEY_FP=AB675CE4CC64251G3S9AE1DAA88ARRTY2C009E2D
```
### :sailboat:&nbsp; Installing k3s with k3sup
Here we will be install [k3s](https://k3s.io/) with [k3sup](https://github.com/alexellis/k3sup).
1. Ensure you are able to SSH into you nodes with using your private ssh key. This is how k3sup is able to connect to your remote node.
2. Install the master node
```sh
k3sup install \
--host=169.254.1.1 \
--user=k8s-at-home \
--k3s-version=v1.20.5+k3s1 \
--k3s-extra-args="--disable servicelb --disable traefik"
```
3. Join a worker node(s) (optional)
```sh
k3sup join \
--host=169.254.1.2 \
--server-host=169.254.1.1 \
--k3s-version=v1.20.5+k3s1 \
--user=k8s-at-home
```
4. Verify the nodes are online
```sh
kubectl --kubeconfig=./kubeconfig get nodes
# NAME STATUS ROLES AGE VERSION
# k8s-master-a Ready control-plane,master 4d20h v1.20.5+k3s1
# k8s-worker-a Ready worker 4d20h v1.20.5+k3s1
```
### :small_blue_diamond:&nbsp; GitOps with Flux
Here we will be installing [flux](https://toolkit.fluxcd.io/) after some quick bootstrap steps.
1. Pre-create the `flux-system` namespace
```sh
kubectl --kubeconfig=./kubeconfig create namespace flux-system --dry-run=client -o yaml | kubectl apply -f -
```
1. Add the Flux GPG key in-order for Flux to decrypt SOPS secrets
```sh
gpg --export-secret-keys --armor "${FLUX_KEY_FP}" |
kubectl --kubeconfig=./kubeconfig create secret generic sops-gpg \
--namespace=flux-system \
--from-file=sops.asc=/dev/stdin
```
3. Update files using `envsubst` or by updating the files listed below manually
```sh
export BOOTSTRAP_GITHUB_REPOSITORY="k8s-at-home/home-cluster"
export BOOTSTRAP_METALLB_LB_RANGE="169.254.1.10-169.254.1.20"
export BOOTSTRAP_DOMAIN="k8s-at-home.com"
export BOOTSTRAP_DOMAIN_CERT="k8s-at-home"
export BOOTSTRAP_CLOUDFLARE_TOKEN="dsKq41iLAbXE37GV"
export BOOTSTRAP_INGRESS_NGINX_LB="169.254.1.10"
envsubst < ./.sops.yaml
envsubst < ./cluster/cluster-secrets.yaml
envsubst < ./cluster/cluster-settings.yaml
envsubst < ./cluster/base/flux-system/gotk-sync.yaml
envsubst < ./cluster/core/infrastructure/cert-manager/secret.enc.yaml
```
4. **Verify** all the above files have the correct information present
5. Encrypt `cluster/cluster-secrets.yaml` and `cert-manager/secret.enc.yaml` with SOPS
```sh
export GPG_TTY=$(tty)
sops --encrypt --in-place ./cluster/base/cluster-secrets.yaml
sops --encrypt --in-place ./cluster/core/infrastructure/cert-manager/secret.enc.yaml
```
Variables defined in `cluster-secrets.yaml` and `cluster-settings.yaml` will be usable anywhere in your YAML manifests under `./cluster`
6. **Verify** all the above files are **encrypted** with SOPS
7. Push you changes to git
```sh
git add -A
git commit -m "initial commit"
git push
```
8. Install Flux
```sh
kubectl --kubeconfig=./kubeconfig --kustomize=./cluster/base/flux-system
```
## :mega:&nbsp; Post installation
### Verify ingress
If your cluster is not accessible to outside world you can update your hosts file to verify the ingress controller is working.
```sh
sudo echo "${BOOTSTRAP_INGRESS_NGINX_LB} ${BOOTSTRAP_DOMAIN} homer.${BOOTSTRAP_DOMAIN}" >> /etc/hosts
```
Head over to your browser and you _should_ be able to access `https://homer.${BOOTSTRAP_DOMAIN}`
### pre-commit
It is advisable to install [pre-commit](https://pre-commit.com/) and the pre-commit hooks that come with this repository.
[sops-pre-commit](https://github.com/k8s-at-home/sops-pre-commit) will check to make sure you are not by accident commiting your SOPS secrets un-encrypted.
After pre-commit is installed run:
```sh
pre-commit install-hooks
```
### direnv
This is a great tool to export environment variables depending on what your present working directory is, head over to their [installation guide](https://direnv.net/docs/installation.html) and don't forget to hook it into your shell!
### Delete Flux GPG key
Since there is a GPG key specifically for Flux you can remove the secret key from your personal machine.
```sh
gpg --delete-secret-keys "${FLUX_KEY_FP}"
```
### VSCode SOPS extension
[Here](https://marketplace.visualstudio.com/items?itemName=signageos.signageos-vscode-sops)'s a neat little plugin for those using VSCode.
It will automatically decrypt you SOPS secrets when you click on the file in the editor and encrypt them when you save the file.
## :point_right:&nbsp; Debugging
Manually sync Flux with your Git repository
```sh
flux --kubeconfig=./kubeconfig reconcile source git flux-system
# ► annotating GitRepository flux-system in flux-system namespace
# ✔ GitRepository annotated
# ◎ waiting for GitRepository reconciliation
# ✔ GitRepository reconciliation completed
# ✔ fetched revision main/943e4126e74b273ff603aedab89beb7e36be4998
```
Show the health of you kustomizations
```sh
kubectl --kubeconfig=./kubeconfig get kustomization -A
# NAMESPACE NAME READY STATUS AGE
# flux-system apps True Applied revision: main/943e4126e74b273ff603aedab89beb7e36be4998 3d19h
# flux-system core True Applied revision: main/943e4126e74b273ff603aedab89beb7e36be4998 4d6h
# flux-system flux-system True Applied revision: main/943e4126e74b273ff603aedab89beb7e36be4998 4d6h
```
Show the health of your main Flux `GitRepository`
```sh
flux --kubeconfig=./kubeconfig get sources git
# NAME READY MESSAGE REVISION SUSPENDED
# flux-system True Fetched revision: main/943e4126e74b273ff603aedab89beb7e36be4998 main/943e4126e74b273ff603aedab89beb7e36be4998 False
```
Show the health of your `HelmRelease`s
```sh
flux --kubeconfig=./kubeconfig get helmrelease -A
# NAMESPACE NAME READY MESSAGE REVISION SUSPENDED
# cert-manager cert-manager True Release reconciliation succeeded v1.3.0 False
# home homer True Release reconciliation succeeded 4.2.0 False
# networking ingress-nginx True Release reconciliation succeeded 3.29.0 False
```
Show the health of your `HelmRepository`s
```sh
flux --kubeconfig=./kubeconfig get sources helm -A
# NAMESPACE NAME READY MESSAGE REVISION SUSPENDED
# flux-system bitnami-charts True Fetched revision: 0ec3a3335ff991c45735866feb1c0830c4ed85cf 0ec3a3335ff991c45735866feb1c0830c4ed85cf False
# flux-system ingress-nginx-charts True Fetched revision: 45669a3117fc93acc09a00e9fb9b4445e8990722 45669a3117fc93acc09a00e9fb9b4445e8990722 False
# flux-system jetstack-charts True Fetched revision: 7bad937cc82a012c9ee7d7a472d7bd66b48dc471 7bad937cc82a012c9ee7d7a472d7bd66b48dc471 False
# flux-system k8s-at-home-charts True Fetched revision: 1b24af9c5a1e3da91618d597f58f46a57c70dc13 1b24af9c5a1e3da91618d597f58f46a57c70dc13 False
```
Flux has a wide range of CLI options available be sure to run `flux --help` to view more!
## :grey_question:&nbsp; What's next?
The world is your cluster, try installing another application!
## :handshake:&nbsp; Thanks
Big shout out to all the authors and contributors to the projects that we are using in this repository.