feat: refactor config file (#1267)

Signed-off-by: Devin Buhl <devin@buhl.casa>

bootstrap/templates/kubernetes/apps/cert-manager/cert-manager/ks.yaml.j2

@@ -18,3 +18,27 @@ spec:
   interval: 30m
   retryInterval: 1m
   timeout: 5m
+#% if cloudflare.enabled %#
+---
+apiVersion: kustomize.toolkit.fluxcd.io/v1
+kind: Kustomization
+metadata:
+  name: &app cert-manager-issuers
+  namespace: flux-system
+spec:
+  targetNamespace: cert-manager
+  commonMetadata:
+    labels:
+      app.kubernetes.io/name: *app
+  dependsOn:
+    - name: cert-manager
+  path: ./kubernetes/apps/cert-manager/cert-manager/issuers
+  prune: true
+  sourceRef:
+    kind: GitRepository
+    name: home-kubernetes
+  wait: true
+  interval: 30m
+  retryInterval: 1m
+  timeout: 5m
+#% endif %#